Author: Michael R. Crusoe <crusoe@debian.org>
Description: Use the Debian pdqsort-dev package
Forwarded: not-needed
--- a/setup.py
+++ b/setup.py
@@ -10,10 +10,6 @@ ROOT_DIR = os.getcwd()
 
 SUBMOD_DIR = os.path.join(ROOT_DIR, "submods")
 SUBMODS = [
-    "bwa", 
-    "fast5", 
-    "hdf5", 
-    "pdqsort", 
     "toml11"
 ]
 
@@ -103,7 +99,7 @@ uncalled = Extension(
         "./submods",
         subprocess.check_output("pkg-config  --cflags hdf5-serial | sed 's/-I//'", shell=True, encoding='UTF-8').strip(),
         "/usr/include/fast5/",
-        "./submods/pdqsort",
+        "/usr/include/",
         "./submods/toml11",
         get_pybind_include()
     ],
